How do you find if the user defined modules are imported?
This tries to see if it is imported ("-" is for easier to read): - Loaded modules:
-
-
- tokenize: LPAR,PseudoToken,ENDMARKER
-
- heapq: sort,izip,_nlargest
-
- __future__: __module__,getMandatoryRelease,division
-
- copy_reg: _inverted_registry,_slotnames,__all__
-
- sre_compile: _optimize_unicode,isstring,_sre
-
- _collections:
-
- cStringIO:
-
- _sre:
-
- functools: wraps,partial,WRAPPER_ASSIGNMENTS
-
- random: WichmannHill,_sin,_exp
-
- cPickle:
-
- __builtin__:
-
- subprocess: __module__,STDOUT,__str__
-
- dummy_thread: __module__,__enter__,__exit__
-
- gc:
-
- cmd: do_help,__module__,prompt
-
- __main__: PREDICTORS_CFG_DIR,sequence,tearDown
-
- operator:
-
- array:
-
- select:
-
- _heapq:
-
- _threading_local: current_thread,__module__,__new__
-
- abc: __module__,_InstanceType,_abc_invalidation_counter
-
- _bisect:
-
- posixpath: _varprog,sameopenfile,splitext
-
- _random:
-
- os2emxpath: pardir,realpath,stat
-
- tempfile: _TemporaryFileWrapper,_set_cloexec,_candidate_tempdir_list
-
- errno:
-
- pprint: __module__,format,_StringIO
-
- binascii:
-
- token: DEDENT,LPAR,ENDMARKER
-
- sre_constants: REPEAT_ONE,makedict,AT_END_LINE
-
- re: __module__,finditer,_expand
-
- _abcoll: __module__,Container,__isub__
-
- collections: __repr__,OrderedDict,_make
-
- ntpath: pardir,realpath,exists
-
- threading: _BoundedSemaphore,_sleep,Semaphore
-
- opcode: hasjrel,hasconst,EXTENDED_ARG
-
- _struct:
-
- _warnings:
-
- math:
-
- shlex: __module__,get_token,file
-
- fcntl:
-
- genericpath: isdir,stat,commonprefix
-
- stat: S_IWRITE,ST_MTIME,S_IRGRP
-
- string: ascii_lowercase,upper,__module__
-
- warnings: __module__,filterwarnings,once_registry
-
- UserDict: __module__,popitem,pop
-
- inspect: CO_VARARGS,formatargvalues,findsource
-
- repr: aRepr,__module__,repr_list
-
- struct: _clearcache,__doc__
-
- sys:
-
- pwd:
-
- imp:
-
- getopt: opt,__module__,short_has_arg
-
- readline:
-
- copy: _copy_with_copy_method,__module__,_deepcopy_atomic
-
- ConfigParser: optionxform,InterpolationError,set
-
- bdb: __module__,get_file_breaks,clear_bpbynumber
-
- types: __module__,IntType,TypeType
-
- strop:
-
- _functools:
-
- keyword: iskeyword,main,kwlist
-
- thread:
-
- StringIO: __module__,readlines,getvalue
-
- bisect: insort_right,bisect,bisect_left
-
- pickle: EMPTY_DICT,NEWTRUE,TypeType
-
- signal:
-
- traceback: print_stack,print_exception,print_last
-
- difflib: _count_leading,heapq,_namedtuple
-
- marshal:
-
- linecache: updatecache,clearcache,__all__
-
- itertools:
-
- posix:
-
- doctest: REPORT_UDIFF,get_doctest,_parse_example
-
- unittest: parseArgs,assertNotEquals,__str__
-
- time:
-
- sre_parse: _PATTERNENDERS,SRE_FLAG_UNICODE,AT_END
-
- os: pardir,__module__,sep
-
- pdb: do_enable,help,help_run
-
- dis: hasjrel,hasconst,HAVE_ARGUMENT
When module has these importations: - import os
-
import unittest #User-Defined
-
from ConfigParser import ConfigParser #User-Defined
-
-
-
from common import RNASPACE_DIR, TEST_DIR_NAME, DATA_DIR_NAME, \
-
TEST_USER_DIR_NAME, WORKSPACE_DIR, SEQ_FASTA_SUFFIX, \
-
TEST_PROJECT_NAME, SEQ_DIR_NAME, SEQ_TXT_SUFFIX, \
-
PREDICTORS_CFG_DIR, PREDICTOR_CFG_SUFFIX, OUTPUT_DIR_NAME, \
-
TEST_RUN_NAME, OUTPUT_FILE_SUFFIX, REFERENCE_DIR_NAME, \
-
REFERENCE_FILE_SUFFIX
-
#User-Defined
-
-
import sys
-
path_rnaspace = "/bi/opt/RNAspace/rnaspace_sources/rnaspace/rnaspace/"
-
sys.path.append(path_rnaspace)
-
-
from rnaspace.core.sequence import sequence #User-Defined
-
from rnaspace.core.conversion.gff_converter import gff_converter #User-Defined
-
from rnaspace.core.conversion.csv_converter import csv_converter #User-Defined
-
from rnaspace.core.conversion.fasta_converter import fasta_converter #User-Defined
-
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