There's a lot of greek for me here ... should I post to numpy-discussions as
well???
The backtrace is at the bottom.... Thanks!
GNU gdb Fedora (6.8-21.fc9)
Copyright (C) 2008 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later
<http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law. Type "show copying"
and "show warranty" for details.
This GDB was configured as "i386-redhat-linux-gnu"...
Missing separate debuginfo for /usr/local/bin/python
Try: yum --enablerepo='*-debuginfo' install
/usr/lib/debug/.build-id/0c/81115ef93a220ed16b0c9a30ded18b41a09a83.debug
(no debugging symbols found)
(gdb) run PyFlex_test.py
Starting program: /usr/local/bin/python PyFlex_test.py
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
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[Thread debugging using libthread_db enabled]
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
loading modules...
[New Thread 0xb802a6c0 (LWP 12858)]
(no debugging symbols found)
(no debugging symbols found)
[snip ...]
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
Missing separate debuginfos, use: debuginfo-install e2fsprogs.i386
glibc.i686 keyutils.i386 krb5.i386 libselinux.i386 numpy.i386 openssl.i686
python.i386 zlib.i386
---Type <returnto continue, or q <returnto quit---
(no debugging symbols found)
[snip ...]
(no debugging symbols found)
*** glibc detected *** /usr/local/bin/python: munmap_chunk(): invalid
pointer: 0xb388d008 ***
======= Backtrace: =========
/lib/libc.so.6[0x7b0874]
/usr/lib/python2.5/site-packages/numpy/core/multiarray.so[0x44a24b]
/usr/lib/libpython2.5.so.1.0(PyEval_EvalFrameEx+0xbe7)[0x56303f7]
/usr/lib/libpython2.5.so.1.0(PyEval_EvalCodeEx+0x695)[0x5636d75]
/usr/lib/libpython2.5.so.1.0[0x55d0eb2]
/usr/lib/libpython2.5.so.1.0(PyObject_Call+0x37)[0x55b10b7]
/usr/lib/libpython2.5.so.1.0(PyEval_EvalFrameEx+0x466f)[0x5633e7f]
/usr/lib/libpython2.5.so.1.0(PyEval_EvalCodeEx+0x695)[0x5636d75]
/usr/lib/libpython2.5.so.1.0(PyEval_EvalCode+0x63)[0x5636fd3]
/usr/lib/libpython2.5.so.1.0[0x5652542]
/usr/lib/libpython2.5.so.1.0(PyRun_FileExFlags+0x92)[0x5652602]
/usr/lib/libpython2.5.so.1.0(PyRun_SimpleFileExFlags+0x1bc)[0x5653d8c]
/usr/lib/libpython2.5.so.1.0(PyRun_AnyFileExFlags+0x7a)[0x56544fa]
/usr/lib/libpython2.5.so.1.0(Py_Main+0xc4f)[0x565e3df]
/usr/local/bin/python(main+0x32)[0x80485d2]
/lib/libc.so.6(__libc_start_main+0xe6)[0x7595d6]
/usr/local/bin/python[0x8048501]
======= Memory map: ========
00110000-00111000 r-xp 00110000 00:00 0 [vdso]
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/usr/lib/python2.5/lib-dynload/stropmodule.so
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/usr/lib/python2.5/lib-dynload/stropmodule.so
00117000-0011a000 r-xp 00000000 fd:00 1835717
/usr/lib/python2.5/lib-dynload/_localemodule.so
0011a000-0011b000 rw-p 00003000 fd:00 1835717
/usr/lib/python2.5/lib-dynload/_localemodule.so
0011b000-00121000 r-xp 00000000 fd:00 1835750
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00121000-00122000 rw-p 00006000 fd:00 1835750
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00122000-00128000 r-xp 00000000 fd:00 1835727
/usr/lib/python2.5/lib-dynload/_struct.so
00128000-00129000 rw-p 00006000 fd:00 1835727
/usr/lib/python2.5/lib-dynload/_struct.so
00129000-0012c000 r-xp 00000000 fd:00 1835762
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0012c000-0012e000 rw-p 00002000 fd:00 1835762
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0012e000-00130000 r-xp 00000000 fd:00 1835714
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00130000-00131000 rw-p 00002000 fd:00 1835714
/usr/lib/python2.5/lib-dynload/_hashlib.so
00131000-00134000 r-xp 00000000 fd:00 1835747
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0013a000-0013c000 r-xp 00000000 fd:00 1835721
/usr/lib/python2.5/lib-dynload/_randommodule.so
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/usr/lib/python2.5/lib-dynload/_randommodule.so
0013d000-0013f000 r-xp 00000000 fd:00 1835741
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00140000-00141000 r-xp 00000000 fd:00 1835728
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00142000-0014c000 r-xp 00000000 fd:00 1835723
/usr/lib/python2.5/lib-dynload/_socketmodule.so
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/usr/lib/python2.5/lib-dynload/_socketmodule.so
0014f000-00152000 r-xp 00000000 fd:00 1835725
/usr/lib/python2.5/lib-dynload/_ssl.so
00152000-00153000 rw-p 00003000 fd:00 1835725
/usr/lib/python2.5/lib-dynload/_ssl.so
00153000-00156000 r-xp 00000000 fd:00 1835734
/usr/lib/python2.5/lib-dynload/cStringIO.so
00156000-00157000 rw-p 00003000 fd:00 1835734
/usr/lib/python2.5/lib-dynload/cStringIO.so
00157000-00158000 r-xp 00000000 fd:00 1835700
/usr/lib/python2.5/lib-dynload/_bisect.so
00158000-00159000 rw-p 00001000 fd:00 1835700
/usr/lib/python2.5/lib-dynload/_bisect.so
00159000-00186000 r-xp 00000000 fd:00 2131344
/usr/lib/python2.5/site-packages/numpy/core/umath.so
00186000-00189000 rw-p 0002d000 fd:00 2131344
/usr/lib/python2.5/site-packages/numpy/core/umath.so
00189000-0019f000 r-xp 00000000 fd:00 2131275
/usr/lib/python2.5/site-packages/numpy/core/_sort.so
0019f000-001a0000 rw-p 00015000 fd:00 2131275
/usr/lib/python2.5/site-packages/numpy/core/_sort.so
001a0000-001b1000 r-xp 00000000 fd:00 1835733
/usr/lib/python2.5/lib-dynload/cPickle.so
001b1000-001b2000 rw-p 00010000 fd:00 1835733
/usr/lib/python2.5/lib-dynload/cPickle.so
001b2000-001bc000 r-xp 00000000 fd:00 1835752
/usr/lib/python2.5/lib-dynload/parsermodule.so
001bc000-001bd000 rw-p 00009000 fd:00 1835752
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001bd000-001be000 r-xp 00000000 fd:00 2884361
/usr/lib/python2.5/site-packages/matplotlib/backends/_backend_gdk.so
001be000-001bf000 rw-p 00001000 fd:00 2884361
/usr/lib/python2.5/site-packages/matplotlib/backends/_backend_gdk.so
001bf000-001c7000 r-xp 00000000 fd:00 1427523
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/usr/lib/libkrb5support.so.0.1
001c8000-001c9000 r-xp 00000000 fd:00 1646403
/usr/lib/gtk-2.0/2.10.0/loaders/svg_loader.so
001c9000-001ca000 rw-p 00001000 fd:00 1646403
/usr/lib/gtk-2.0/2.10.0/loaders/svg_loader.so
001ca000-00301000 r-xp 00000000 fd:00 33685671 /lib/libcrypto.so.0.9.8g
00301000-00315000 rw-p 00136000 fd:00 33685671 /lib/libcrypto.so.0.9.8g
00315000-00318000 rw-p 00315000 00:00 0
00318000-0031e000 r-xp 00000000 fd:00 1835745
/usr/lib/python2.5/lib-dynload/itertoolsmodule.so
0031e000-00320000 rw-p 00006000 fd:00 1835745
/usr/lib/python2.5/lib-dynload/itertoolsmodule.so
00320000-00323000 r-xp 00000000 fd:00 1835748
/usr/lib/python2.5/lib-dynload/mmapmodule.so
00323000-00324000 rw-p 00003000 fd:00 1835748
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00324000-00326000 r-xp 00000000 fd:00 33685662 /lib/libkeyutils-1.2.so
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00329000-00370000 r-xp 00000000 fd:00 33685676 /lib/libssl.so.0.9.8g
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/usr/lib/python2.5/site-packages/numpy/core/multiarray.so
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00c2c000-00c2d000 rw-p 0001a000 fd:00 1433724 /usr/lib/libxcb.so.1.0.0
00c2d000-00c39000 r-xp 00000000 00:14 101056553
/homevip/burkhart/07_jfb/Dev_fp/PyFlex/FortFlex4.so
00c39000-00c3a000 rw-p 0000c000 00:14 101056553
/homevip/burkhart/07_jfb/Dev_fp/PyFlex/FortFlex4.so
00c3c000-00cc7000 r-xp 00000000 fd:00 1415687
/usr/lib/libfreetype.so.6.3.16
00cc7000-00ccb000 rw-p 0008a000 fd:00 1415687
/usr/lib/libfreetype.so.6.3.16
00ccb000-00cf0000 r-xp 00000000 fd:00 33685683 /lib/libexpat.so.1.5.2
00cf0000-00cf2000 rw-p 00024000 fd:00 33685683 /lib/libexpat.so.1.5.2
00cf2000-00cff000 r-xp 00000000 fd:00 33685687
/lib/libgcc_s-4.3.0-20080428.so.1
00cff000-00d00000 rw-p 0000c000 fd:00 33685687
/lib/libgcc_s-4.3.0-20080428.so.1
00d02000-00d13000 r-xp 00000000 fd:00 33685663 /lib/libresolv-2.8.so
00d13000-00d14000 r--p 00010000 fd:00 33685663 /lib/libresolv-2.8.so
00d14000-00d15000 rw-p 00011000 fd:00 33685663 /lib/libresolv-2.8.so
00d15000-00d17000 rw-p 00d15000 00:00 0
00d19000-00d1b000 r-xp 00000000 fd:00 33685669 /lib/libcom_err.so.2.1
00d1b000-00d1c000 rw-p 00001000 fd:00 33685669 /lib/libcom_err.so.2.1
00d1e000-00d20000 r-xp 00000000 fd:00 33685614 /lib/libutil-2.8.so
00d20000-00d21000 r--p 00001000 fd:00 33685614 /lib/libutil-2.8.so
00d21000-00d22000 rw-p 00002000 fd:00 33685614 /lib/libutil-2.8.so
00d24000-00d52000 r-xp 00000000 fd:00 1433746
/usr/lib/libfontconfig.so.1.3.0
00d52000-00d53000 rw-p 0002e000 fd:00 1433746
/usr/lib/libfontconfig.so.1.3.0
00d5b000-00d82000 r-xp 00000000 fd:00 1433730 /usr/lib/libpng12.so.0.29.0
00d82000-00d83000 rw-p 00026000 fd:00 1433730 /usr/lib/libpng12.so.0.29.0
00d85000-00da9000 r-xp 00000000 fd:00 1433739 /usr/lib/libk5crypto.so.3.1
00da9000-00daa000 rw-p 00024000 fd:00 1433739 /usr/lib/libk5crypto.so.3.1
00dac000-00dd9000 r-xp 00000000 fd:00 1433741
/usr/lib/libgssapi_krb5.so.2.2
00dd9000-00ddb000 rw-p 0002d000 fd:00 1433741
/usr/lib/libgssapi_krb5.so.2.2
00ddb000-00ebc000 r-xp 00000000 fd:00 33685594
/lib/libglib-2.0.so.0.1600.5
00ebc000-00ebd000 rw-p 000e1000 fd:00 33685594
/lib/libglib-2.0.so.0.1600.5
00ebd000-010a6000 r-xp 00000000 fd:00 1903979
/usr/lib/python2.5/site-packages/gtk-2.0/gtk/_gtk.so
010a6000-010cc000 rw-p 001e9000 fd:00 1903979
/usr/lib/python2.5/site-packages/gtk-2.0/gtk/_gtk.so
02025000-0205c000 r-xp 00000000 fd:00 1438319
/usr/lib/libcroco-0.6.so.3.0.1
0205c000-0205f000 rw-p 00036000 fd:00 1438319
/usr/lib/libcroco-0.6.so.3.0.1
02061000-02095000 r-xp 00000000 fd:00 1435822
/usr/lib/libgsf-1.so.114.0.8
02095000-02098000 rw-p 00033000 fd:00 1435822
/usr/lib/libgsf-1.so.114.0.8
02098000-02099000 rw-p 02098000 00:00 0
0209b000-020cf000 r-xp 00000000 fd:00 1438320
/usr/lib/librsvg-2.so.2.22.2
020cf000-020d0000 rw-p 00034000 fd:00 1438320
/usr/lib/librsvg-2.so.2.22.2
03a4c000-03e4e000 r-xp 00000000 fd:00 1433757
/usr/lib/libgtk-x11-2.0.so.0.1200.11
03e4e000-03e54000 rw-p 00402000 fd:00 1433757
/usr/lib/libgtk-x11-2.0.so.0.1200.11
03e54000-03e55000 rw-p 03e54000 00:00 0
044f9000-0486a000 r-xp 00000000 fd:00 1477026
/usr/lib/atlas/libblas.so.3.0
0486a000-0486e000 rw-p 00371000 fd:00 1477026
/usr/lib/atlas/libblas.so.3.0
04904000-04971000 r-xp 00000000 fd:00 1433748 /usr/lib/libcairo.so.2.17.5
04971000-04973000 rw-p 0006d000 fd:00 1433748 /usr/lib/libcairo.so.2.17.5
04975000-04990000 r-xp 00000000 fd:00 1433756
/usr/lib/libatk-1.0.so.0.2209.1
04990000-04992000 rw-p 0001a000 fd:00 1433756
/usr/lib/libatk-1.0.so.0.2209.1
04994000-04a00000 r-xp 00000000 fd:00 33685612 /lib/libgio-2.0.so.0.0.0
04a00000-04a02000 rw-p 0006c000 fd:00 33685612 /lib/libgio-2.0.so.0.0.0
04a04000-04aeb000 r-xp 00000000 fd:00 1433759
/usr/lib/libstdc++.so.6.0.10
04aeb000-04aef000 r--p 000e6000 fd:00 1433759
/usr/lib/libstdc++.so.6.0.10
04aef000-04af1000 rw-p 000ea000 fd:00 1433759
/usr/lib/libstdc++.so.6.0.10
04af1000-04af6000 rw-p 04af1000 00:00 0
0510d000-0511d000 r-xp 00000000 fd:00 33685680 /lib/libbz2.so.1.0.4
0511d000-0511e000 rw-p 00010000 fd:00 33685680 /lib/libbz2.so.1.0.4
0558d000-056b1000 r-xp 00000000 fd:00 1425154
/usr/lib/libpython2.5.so.1.0
056b1000-056d7000 rw-p 00123000 fd:00 1425154
/usr/lib/libpython2.5.so.1.0
056d7000-056dd000 rw-p 056d7000 00:00 0
06082000-060a5000 r-xp 00000000 fd:00 2884359
/usr/lib/python2.5/site-packages/matplotlib/backends/_gtkagg.so
060a5000-060a6000 rw-p 00022000 fd:00 2884359
/usr/lib/python2.5/site-packages/matplotlib/backends/_gtkagg.so
0722e000-0765a000 r-xp 00000000 fd:00 1475306
/usr/lib/atlas/liblapack.so.3.0
0765a000-0765c000 rw-p 0042b000 fd:00 1475306
/usr/lib/atlas/liblapack.so.3.0
0765c000-0776a000 rw-p 0765c000 00:00 0
07c85000-07ca3000 r-xp 00000000 fd:00 1838597
/usr/lib/python2.5/site-packages/gtk-2.0/pango.so
07ca3000-07ca7000 rw-p 0001d000 fd:00 1838597
/usr/lib/python2.5/site-packages/gtk-2.0/pango.so
07d34000-07e7f000 r-xp 00000000 fd:00 1438299 /usr/lib/libxml2.so.2.7.1
07e7f000-07e84000 rw-p 0014a000 fd:00 1438299 /usr/lib/libxml2.so.2.7.1
07e84000-07e85000 rw-p 07e84000 00:00 0
08048000-08049000 r-xp 00000000 fd:00 1416780 /usr/bin/python
08049000-0804a000 rw-p 00000000 fd:00 1416780 /usr/bin/python
083e3000-0841d000 r-xp 00000000 fd:00 1838595
/usr/lib/python2.5/site-packages/gtk-2.0/atk.so
0841d000-08421000 rw-p 0003a000 fd:00 1838595
/usr/lib/python2.5/site-packages/gtk-2.0/atk.so
0875b000-08787000 r-xp 00000000 fd:00 1433747
/usr/lib/libpixman-1.so.0.10.0
08787000-08788000 rw-p 0002c000 fd:00 1433747
/usr/lib/libpixman-1.so.0.10.0
09000000-090fd000 r-xp 00000000 fd:00 1433726 /usr/lib/libX11.so.6.2.0
090fd000-09101000 rw-p 000fc000 fd:00 1433726 /usr/lib/libX11.so.6.2.0
09191000-091a2000 r-xp 00000000 fd:00 1904378
/usr/lib/python2.5/site-packages/cairo/_cairo.so
091a2000-091a5000 rw-p 00010000 fd:00 1904378
/usr/lib/python2.5/site-packages/cairo/_cairo.so
09208000-09f99000 rw-p 09208000 00:00 0 [heap]
b3711000-b7a51000 rw-p b3711000 00:00 0
b7b51000-b7b86000 r--s 00000000 fd:00 3605123 /var/db/nscd/hosts
b7b86000-b7d07000 rw-p b7b86000 00:00 0
b7d34000-b7d69000 r--s 00000000 fd:00 3605121 /var/db/nscd/passwd
b7d69000-b7d6a000 rw-p b7d69000 00:00 0
b7d6a000-b7d71000 r--p 0230d000 fd:00 1423512
/usr/lib/locale/locale-archive
b7d71000-b7da8000 r--p 02279000 fd:00 1423512
/usr/lib/locale/locale-archive
b7da8000-b7fa8000 r--p 00000000 fd:00 1423512
/usr/lib/locale/locale-archive
b7fa8000-b802c000 rw-p b7fa8000 00:00 0
b803e000-b8045000 r--s 00000000 fd:00 1510866
/usr/lib/gconv/gconv-modules.cache
b8045000-b8046000 rw-p b8045000 00:00 0
bf7ff000-bf845000 rw-p bffba000 00:00 0 [stack]
Program received signal SIGABRT, Aborted.
0x00110416 in __kernel_vsyscall ()
Missing separate debuginfos, use: debuginfo-install atk.i386 atlas.i386
bzip2.i386 cairo.i386 expat.i386 fontconfig.i386 freetype.i386 gcc.i386
glib2.i386 gtk2.i386 libX11.i386 libXau.i386 libXcomposite.i386
libXcursor.i386 libXdmcp.i386 libXext.i386 libXfixes.i386 libXi.i386
libXinerama.i386 libXrandr.i386 libXrender.i386 libcroco.i386 libgsf.i386
libpng.i386 librsvg2.i386 libxcb.i386 libxml2.i386 pango.i386 pixman.i386
pycairo.i386 pygobject2.i386 pygtk2.i386
(gdb) bt
#0 0x00110416 in __kernel_vsyscall ()
#1 0x0076d660 in raise () from /lib/libc.so.6
#2 0x0076f028 in abort () from /lib/libc.so.6
#3 0x007aa64d in __libc_message () from /lib/libc.so.6
#4 0x007b0874 in malloc_printerr () from /lib/libc.so.6
#5 0x0044a24b in ?? () from
/usr/lib/python2.5/site-packages/numpy/core/multiarray.so
#6 0x056303f7 in PyEval_EvalFrameEx () from /usr/lib/libpython2.5.so.1.0
#7 0x05636d75 in PyEval_EvalCodeEx () from /usr/lib/libpython2.5.so.1.0
#8 0x055d0eb2 in ?? () from /usr/lib/libpython2.5.so.1.0
#9 0x055b10b7 in PyObject_Call () from /usr/lib/libpython2.5.so.1.0
#10 0x05633e7f in PyEval_EvalFrameEx () from /usr/lib/libpython2.5.so.1.0
#11 0x05636d75 in PyEval_EvalCodeEx () from /usr/lib/libpython2.5.so.1.0
#12 0x05636fd3 in PyEval_EvalCode () from /usr/lib/libpython2.5.so.1.0
#13 0x05652542 in ?? () from /usr/lib/libpython2.5.so.1.0
#14 0x05652602 in PyRun_FileExFlags () from /usr/lib/libpython2.5.so.1.0
#15 0x05653d8c in PyRun_SimpleFileExFlags () from
/usr/lib/libpython2.5.so.1.0
#16 0x056544fa in PyRun_AnyFileExFlags () from /usr/lib/libpython2.5.so.1.0
#17 0x0565e3df in Py_Main () from /usr/lib/libpython2.5.so.1.0
#18 0x080485d2 in main ()
(gdb)
Robert Kern-2 wrote:
>--
John [H2O] wrote:>I can try, would you mind giving very brief instructions on how to 'run
it
under gdb'... thanks!
Sure. It goes something like this:
$ gdb python
GNU gdb 6.3.50-20050815 (Apple version gdb-768) (Tue Oct 2 04:07:49 UTC
2007)
Copyright 2004 Free Software Foundation, Inc.
GDB is free software, covered by the GNU General Public License, and you
are
welcome to change it and/or distribute copies of it under certain
conditions.
Type "show copying" to see the conditions.
There is absolutely no warranty for GDB. Type "show warranty" for
details.
This GDB was configured as "i386-apple-darwin"...Reading symbols for
shared
libraries .. done
(gdb) run my_crashing_script.py
... output from gdb
(gdb) bt
... this is the backtrace
If your program doesn't start running immediately after the run command,
but
instead tells you something like this:
Program received signal SIGTRAP, Trace/breakpoint trap.
do this:
(gdb) continue
It depends on your platform, and how gdb is configured whether or not you
get
this, I think. That's what I get on OS X.
--
Robert Kern
"I have come to believe that the whole world is an enigma, a harmless
enigma
that is made terrible by our own mad attempt to interpret it as though
it had
an underlying truth."
-- Umberto Eco
--
http://mail.python.org/mailman/listinfo/python-list
View this message in context: http://www.nabble.com/f2py-Error---m...p20132662.html
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