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Computer Cluster Python Software

Is there any open source Python software (preferably biopython) written
which runs on a cluster. Alternatively are there interfaces written in
Python to existing cluster software.

Jul 19 '05 #1
2 1845
6 Jun 2005 07:22:54 -0700 skrev uli:
Is there any open source Python software (preferably biopython) written
which runs on a cluster. Alternatively are there interfaces written in
Python to existing cluster software.

Can you be more specific? There are for example several MPI interfaces
(pyMPI, pypar, ScientificPytho n.MPI). With pyMPI, you can run python
interactively on a cluster if you want.

But you are probably looking for something else?

btw, soon there will be PyFDM (pyfdm.sf.net) which will make it possible
to do FDM on a cluster (or any parallel computer) with little effort.

Mandus - the only mandus around.
Jul 19 '05 #2
Hi Mandus

Thanks for your reply. I am looking for an application written in
python (preferably a bioinformatics application) which will be able to
take advantage of parallel processing on a cluster. I guess what I am
asking for is applications which have been written using pyMPI or other
python MPI modules.


Jul 19 '05 #3

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