I was wondering if it's possible to print out only a part of a line? The problem is I have an array with one motif in different variants, like this:
small_motif_a CGTCGCACAGC
small_motif_b CGTCGCACGAC
small_motif_c CGTCGCCCAGC
But in my output I only want the variant, without the nucleotide motif. Is that possible?
Like this: small_motif_a 811 821
(positions will be find by the script)
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- $pos= $pos + length($`)+1;
- $pos2= $pos + length($&)-1;
- print OUTFILE "$_\t $pos\t $pos2\n";
- $refseq= $';
- $temp=1;
- $found=$found+1;
Anja